Whole Exome sequencing for the 1000 Genomes Project - SRA

SRX114637: Whole Exome sequencing for the 1000 Genomes Project
6 ILLUMINA (Illumina HiSeq 2000) runs: 16.9M spots, 2.7G bases, 1.8Gb downloads

Design: Whole Exome sequencing for the 1000 Genomes Project via in-solution hybrid selection

Submitted by: Broad Institute (BI)

Study: Exome sequencing of (ACB) African Caribbean in Barbados HapMap population

PRJNA59843 • SRP004069 • All experiments • All runs

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The purpose of the project is to support the discovery and understanding of genetic variants that influence human disease. DNA for sequencing was extracted from lymphoblastoid cell line.

Sample: Coriell HG01956

SAMN00255119 • SRS184287 • All experiments • All runs

Organism: Homo sapiens

Library:

Name: Catch-88572

Instrument: Illumina HiSeq 2000

Strategy: WXS

Source: GENOMIC

Selection: Hybrid Selection

Layout: PAIRED

Spot descriptor:

1 forward barcode

Group tag	Basecalls
tagged_250	ATAGCGTC

85 reverse

Experiment attributes: (show all 4 attributes...) (hide...)

4 BI attributes: (show...)(hide...)

BI GSSR sample ID: 120509.0 
BI GSSR sample LSID: broadinstitute.org:bsp.prod.sample:25MS8 
BI project name: C777 
BI work request ID: 26159 

Pipeline: show...hide...

Name	Step	Program	Version
base caller	2011-09-10 08:48:19.0	GAPipeline	RTA1.12.4.2

Runs: 6 runs, 16.9M spots, 2.7G bases, 1.8Gb

Run	# of Spots	# of Bases	Size	Published
SRR396683	2,832,478	453.2M	306.5Mb	2012-01-06
SRR396690	2,818,893	451M	306.3Mb	2012-01-06
SRR396699	2,785,773	445.7M	302.7Mb	2012-01-06
SRR396701	2,946,109	471.4M	321.2Mb	2012-01-06
SRR396725	2,925,100	468M	317.5Mb	2012-01-06
SRR396726	2,634,378	421.5M	281.1Mb	2012-01-06

ID:: 132401

SRA

Sequence Read Archive

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